Where is the UKB-RAP documentation?

#CheadleDA UK Biobank Data Analysts
#CheadleDA UK Biobank Data Analysts The helpers that keep the community running smoothly. UKB Community team Data Analyst
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The UK Biobank Research Analysis Platform is hosted by DNAnexus. The main documentation is available by following this link: https://dnanexus.gitbook.io/uk-biobank-rap/.

 

Questions about using the UKB-RAP can be posted in this UK Biobank Forum: https://community.ukbiobank.ac.uk/hc/en-us/community/topics. Until January 2024, there was a separate UKB-RAP community forum hosted by DNAnexus, but that has been transferred to this site.

 

Metadata for all the fields in the UKB-RAP can be found in the UK Biobank Showcase: https://biobank.ndph.ox.ac.uk/showcase/search.cgi.

 

Further useful UKB-RAP related links include:

 

https://ukbiobank.dnanexus.com/landing

https://www.dnanexus.com/partnerships/ukbiobank

https://documentation.dnanexus.com/getting-started/cli-quickstart

https://www.youtube.com/watch?v=foB7y2ZJHF4 

https://www.youtube.com/watch?v=dm1xROYy1dA 

https://www.youtube.com/watch?v=vJHzfqrDaFw 

https://youtu.be/1DaUAa_GoYA

https://www.youtube.com/watch?v=uT_jD1Ey3Fk 

https://www.ukbiobank.ac.uk/enable-your-research/research-analysis-platform

https://dnanexus.gitbook.io/uk-biobank-rap/working-on-the-research-analysis-platform/ukb-rap

https://dnanexus.gitbook.io/uk-biobank-rap/500k-wgs-faq

https://dnanexus.gitbook.io/uk-biobank-rap/frequently-asked-questions

https://www.ukbiobank.ac.uk/enable-your-research/costs

https://github.com/UK-Biobank/UKB-RAP-Notebooks-Access

https://github.com/UK-Biobank/SNP-filtering

https://github.com/UK-Biobank/UKB-RAP-Notebooks-Genomics 

 

https://github.com/dnanexus/OpenBio/blob/master/UKB_notebooks/ukb-rap-pheno-basic.ipynb

https://github.com/dnanexus/OpenBio/blob/master/dxdata/getting_started_with_dxdata.ipynb

https://dnanexus.gitbook.io/uk-biobank-rap/working-on-the-research-analysis-platform/using-spark-to-analyze-tabular-data

https://dnanexus.gitbook.io/uk-biobank-rap/working-on-the-research-analysis-platform/bringing-your-app-or-workflow-to-the-research-analysis-platform  

https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/protocol-for-processing-ukb-whole-exome-sequencing-data-sets

 

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