Webinar - UK Biobank Research Analysis Platform overview

Please note: 

• The lag between data availability on showcase and the UKB-RAP is more than 3 weeks. 
• There is different nomenclature in places, e.g. the tabs in the cohort browser filter called 'Pheno' and 'Geno' are now known as 'Clinical' and 'Assays'.
• The final slides on UKB-RAP Community and upcoming events in 2023 are out of date.
• Webinar slides are currently unavailable. 

This video covers how to: 

• Use the Platform to find, explore and analyse UK Biobank’s trove of phenotypic, genomic, imaging, and health record data, covering 500,000 volunteer participants
• Leverage the Platform’s built-in library of popular analysis apps, or use your own apps and pipelines
• Run complex analyses using the Platform’s scalable cloud-based architecture, and wide range of compute resources
• Easily create cohorts to suit the needs of your research
• Share data and collaborate with your approved application team members

Chapters in this video include: 

01:16 Getting Started on UKB RAP

03:48 Data available only on UKB-RAP

04:10 How to Join and Start Analysis on UKB-RAP

06:22 RAP Projects

08:03 Troubleshooting Data Dispensal

08:42 How to update data on UKB-RAP

09:27 Managing project access for users

10:10 File operations available

10:45 Dataset vs Bulk Data

11:30 How to add data to your project

12:44 Bulk Files

16:18 Structure of UKB Data on UKB-RAP

18:54 Datasets & Cohorts

19:41 Introduction to the Cohort Browser

20:34 Cohort Browser components

21:07 Exploring data on the Cohort Browser

22:56 Creating cohorts with filters on the Cohort Browser

23:50 Creating cohorts with comparisons on the Cohort Browser

25:30 Data preview tab for cohort data

25:44 Extracting cohort data

25:50 View Genomics cohort data

27:51 Working with and extracting phenotype data

28:28 Ways to extract phenotype data on UKB-RAP

29:45 Table Exporter app info for extracting phenotype data

29:59 Demo of using dx extract dataset with R for extracting phenotype data

34:15 Demo of using dx extract dataset with JupyterLab for extracting phenotype data

34:45 Decode categorical values results

35:30 Intro to using Apps via UI

37:47 Example of using an app: swiss-army-knife (SAK)

40:53 Options for working with UKB data on UKB-RAP

41:34 Local analysis vs Cloud analysis

More videos from DNAnexus are available here.