Webinar - how to run tools already available on the UKB-RAP

Huma B
Huma B Communications Team The helpers that keep the community running smoothly. UKB Community team
  • Updated

Please note:

  • Some screenshots are outdated and content is different to what users on the UKB-RAP would currently see if they followed the steps in the video.
  • Some UKB-RAP specific terminology is mentioned.
  • The video has some advice on selecting instances (high priority vs spot instances) and similar computation can be done without spending as much. 
  • The second part of the video has a lot of really useful information, but assumes a lot of computational experience.

Learn about:

  • Working with Apps and Workflows in the Platform UI vs the Command Line Interface (CLI)
  • Using popular apps like Table Exporter & Swiss Army Knife
  • Running and monitoring batch jobs with large numbers of files

Key chapters:

00:00 Introductions to Apps/Applets & Workflows

06:13 Running App/Applet Using UI

12:34 Monitoring Jobs Using UI

18:43 Running App/Applet Using CLI

27:30 Batch Execution and Monitoring

42:04 Running and Monitoring Workflows

50:18 Q&A

 

More videos from DNAnexus are available here.

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