How do I put the subset of data from the Cohort Browser into the RStudio? Chai Fungtammasan DNAnexus Team 15 December 2022 00:00 1 comment (question from workshop at KCL on Dec 7, 2022) Comments 1 comment Sort by Date Votes Chai Fungtammasan DNAnexus Team 15 December 2022 00:23 You can user Table Exporter https://ukbiobank.dnanexus.com/app/table-exporter or dx extract_dataset https://documentation.dnanexus.com/user/jupyter-notebooks/dxjupyterlab-spark-cluster/exploring-and-querying-with-spark (see example https://github.com/dnanexus/OpenBio/tree/master/dx-toolkit) to save those data as file. Then you can use dx download or dx-fuse demonstrated in these webinar to analyze those files in Rstudio https://youtu.be/glIjnFxlw-I https://youtu.be/hVDbE1EykXA 0 Please sign in to leave a comment.
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You can user Table Exporter https://ukbiobank.dnanexus.com/app/table-exporter or dx extract_dataset https://documentation.dnanexus.com/user/jupyter-notebooks/dxjupyterlab-spark-cluster/exploring-and-querying-with-spark (see example https://github.com/dnanexus/OpenBio/tree/master/dx-toolkit) to save those data as file. Then you can use dx download or dx-fuse demonstrated in these webinar to analyze those files in Rstudio https://youtu.be/glIjnFxlw-I https://youtu.be/hVDbE1EykXA
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