Whats the best way to do simple operations with files while using bash in the RAP? Permanently deleted user 25 May 2023 00:00 1 comment Is there a best way of using simple bash operations like grep, cut, paste and awk while using bash and operating on some file in my project folder? thank you Comments 1 comment Sort by Date Votes Ondrej Klempir DNAnexus Team 30 May 2023 09:41 Hello @Diana Cornejo?, some possibilities for using bash and interacting with data are elaborated here: https://community.dnanexus.com/s/question/0D5t000004SDdTCCA1/query-of-the-week-3-bring-your-custom-script-to-analyse-ukb-data Of course, you could also use dx-toolkit and get some inspiration from reading this full tutorial by @Ted Laderas?: https://laderast.github.io/bash_for_bioinformatics/01-setup-course.html 0 Please sign in to leave a comment.
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Hello @Diana Cornejo?, some possibilities for using bash and interacting with data are elaborated here: https://community.dnanexus.com/s/question/0D5t000004SDdTCCA1/query-of-the-week-3-bring-your-custom-script-to-analyse-ukb-data
Of course, you could also use dx-toolkit and get some inspiration from reading this full tutorial by @Ted Laderas?: https://laderast.github.io/bash_for_bioinformatics/01-setup-course.html
Please sign in to leave a comment.