How to save the output from swiss army knife based analysis? I used the 'destination' part in the script but the outputs are not getting saved into the project. The codes were executed without an error and the log file shows the output files also.

Please let me know if anyone faced a similar problem or how to resolve this issue.

Comments

3 comments

  • Comment author
    Chai Fungtammasan DNAnexus Team

    If you can share the command, we can look into it, but it's probably best to send request to ukbiobank-support@dnanexus.com  since the support team could inspect your project and log files.

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  • Comment author
    Ondrej Klempir DNAnexus Team

    If I am correct, all the new files that were created in temporary folder are copied back to the parent dnax project as outputs from SAK. Normally, files are copied/saved to root folder of your project. You could also go to Monitor page, inspect the particular successful job and you should see all the outputs there (it should be clickable), this will show you where the outputs were saved.

     

    For specific DESTINATION, try not just --destination PATH, but also specify the full trio of --destination PATH --folder PATH and --project PROJECT.

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  • Comment author
    Former User of DNAx Community_17

    @Chai Fungtammasan? @Ondrej Klempir? Thanks for the suggestions.

     

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