How do I remove intermediate files created during the WDL workflow? I can see that Terra has an option, any approach for DNAnexus? https://support.terra.bio/hc/en-us/articles/360039681632-Saving-storage-costs-by-deleting-Intermediate-files Former User of DNAx Community_100 01 July 2023 00:00 1 comment Comments 1 comment Sort by Date Votes Ondrej Klempir DNAnexus Team 03 July 2023 11:12 There is a possibility to handle intermediate workflow outputs using a custom reorg applet:https://github.com/dnanexus/dxCompiler/blob/develop/doc/ExpertOptions.md#handling-intermediate-workflow-outputs Example and other information could be found here:https://github.com/dnanexus/dxCompiler/blob/develop/doc/CustomReorgAppletExample.mdhttps://github.com/dnanexus/dxCompiler/blob/develop/doc/Internals.md#workflow-translation 0 Please sign in to leave a comment.
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There is a possibility to handle intermediate workflow outputs using a custom reorg applet:
https://github.com/dnanexus/dxCompiler/blob/develop/doc/ExpertOptions.md#handling-intermediate-workflow-outputs
Example and other information could be found here:
https://github.com/dnanexus/dxCompiler/blob/develop/doc/CustomReorgAppletExample.md
https://github.com/dnanexus/dxCompiler/blob/develop/doc/Internals.md#workflow-translation
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