Can I filter when convert from BAM to VCF using the Mutectcaller app?

Permanently deleted user
In my UKB project, I'm using WES data. I?m intereted in spesific genes not all genes. Therefore end of the analysis I?d like to get VCF file to include just spesific genes information. In order to do that, I selected a bed file contains just specific genes as interval file before start analysis with the Mutectcaller app. But I received an error. I share the failure report below. What would you suggest for solving this issue? 

Comments

1 comment

  • Comment author
    Ondrej Klempir DNAnexus Team

    Hello @Gary Burnett?, please would you be able to help with this Mutectcaller-related question?

    0

Please sign in to leave a comment.