When I generate a new file in a JupyterLab notebook and upload it to my project storage, I cannot access that file in the same session, even if I refresh. I get the error that the file does not exist.
In order to access these files, I have to terminate my current JupyterLab session and start a new one, which is time consuming. Is there a workaround I'm not aware of? Thanks!
If you do not use dxfuse and your session is active, you can work with the file directly until you complete your analysis and upload once you are done. The file lives in temporary storage and should be accessible all the time.
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Do you want to access that file via dxfuse, i.e. /mnt/project/...? If so please refer here: https://community.dnanexus.com/s/question/0D5t000003vAWYxCAO/it-seems-that-the-recently-dx-uploaded-files-does-not-show-up-on-mntproject-until-i-restart-the-whole-jupyter-lab-vm
If you do not use dxfuse and your session is active, you can work with the file directly until you complete your analysis and upload once you are done. The file lives in temporary storage and should be accessible all the time.
https://documentation.dnanexus.com/user/jupyter-notebooks#accessing-data
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