I have VCF files. I got these files using the Mutectcaller app. I need to find for each variant gene name, type, alteration, protein change, impact, variant allele frequency, reads information. Which tool could you recommed?
Let's wait if community member like to share their favorite annotation tool.
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Hi @Chai Fungtammasan? ,
Thank you so much for your sharing. I watched the video. I watched the video and I would suggest that to share hands-on training videos like How to install / run OpenCRAVAT on UKB RAP or How to import / run STAARpipeline / FAVORAnnatator on UKB RAP. If I can add these apps/pipelines to my tool library, I'd like to use.
Thanks for the suggestion! We will look into developing this. I recall @Ben Busby? demo now to install OpenCRAVAT a while ago, so we might have some material.
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We have a round table discussion on this topic here: https://www.youtube.com/watch?v=mK_204Zvkbs
Let's wait if community member like to share their favorite annotation tool.
Hi @Chai Fungtammasan? ,
Thank you so much for your sharing. I watched the video. I watched the video and I would suggest that to share hands-on training videos like How to install / run OpenCRAVAT on UKB RAP or How to import / run STAARpipeline / FAVORAnnatator on UKB RAP. If I can add these apps/pipelines to my tool library, I'd like to use.
Thanks for the suggestion! We will look into developing this. I recall @Ben Busby? demo now to install OpenCRAVAT a while ago, so we might have some material.
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