I've completed a regenie gwas on the 200k WES data and am trying to download the results. I initially only ran chromosome 22 and downloaded the result from that.
The jobs for all the other chromosomes are now done and in the web interface and if I do dx ls the resulting files are all listed, but if I do dx ls *.gz only that first chromosome 22 file is listed, and both dx download -f *.gz and dx download -f * download only that one file.
I think you are downloading results to the same folder that contain your chr22 results. When your bash see the *.gz, it expand to your chr22*.gz files and try to download just that. You can try dx ls "*.gz" instead, so your * don't get expand before info is sent to server.
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I think you are downloading results to the same folder that contain your chr22 results. When your bash see the *.gz, it expand to your chr22*.gz files and try to download just that. You can try dx ls "*.gz" instead, so your * don't get expand before info is sent to server.
That was indeed what the issue was! Thank you!
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