Where can I find information about the newest WGS and WES released data? I've searched in the showcase for each variable in the notes section but it says that the data is restricted.
Thanks
Diana
This WES is the final, but there will be 500k WGS release later this year.
0
Permanently deleted user
@Chai Fungtammasan? I don't see anything available under notes for WGS and under WES I can only see the paper referencing the 50K individuals sequenced in the first tranche.
Comments
3 comments
You can use Search for field 24304 for WGS and 23157-23159 for WES.
https://biobank.ndph.ox.ac.uk/showcase/
This WES is the final, but there will be 500k WGS release later this year.
@Chai Fungtammasan? I don't see anything available under notes for WGS and under WES I can only see the paper referencing the 50K individuals sequenced in the first tranche.
I see. I misunderstood that you don't know which one is latest.
For documentation, here is for WES https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/whole-exome-sequencing-oqfe-protocol
For WGS, we did not receive any documentation from UKB or data generation, but here is the publication: https://www.nature.com/articles/s41586-022-04965-x
Check out these two questions too. They will be useful for you:
https://community.dnanexus.com/s/question/0D5t0000048rxMNCAY/i-am-analyzing-the-data-from-the-200k-wgs-pvcf-field-24304-and-there-are-around-200-pvcf-files-per-chromosome-that-have-no-variants-only-the-vcf-file-header-mostly-between-blocks-0-to-200-is-this-intentional-thank-you
https://community.dnanexus.com/s/question/0D5t0000048q6XmCAI/is-there-a-map-for-which-regions-are-in-each-200k-wgs-pvcf-block
Please sign in to leave a comment.