200K WGS data Permanently deleted user 03 November 2022 00:00 1 comment Hi, I want to do some HLA typing analysis using the 200K WGS data, I am wondering would that be the violation of MTA to download the individual-level HLA genotypes results? Comments 1 comment Sort by Date Votes Chai Fungtammasan DNAnexus Team 03 November 2022 15:23 For this question, you might need to ask UKB.Note that you can analyze HLA typing directly in UKB-RAP though. If you can put your HLA typing tool in Docker, then you can run that on UKB-RAP. I did this before. See https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/guide-to-analyzing-large-sample-sets. There is a HLA typing field for all individual as well. 0 Please sign in to leave a comment.
Comments
1 comment
For this question, you might need to ask UKB.
Note that you can analyze HLA typing directly in UKB-RAP though. If you can put your HLA typing tool in Docker, then you can run that on UKB-RAP. I did this before. See https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/guide-to-analyzing-large-sample-sets. There is a HLA typing field for all individual as well.
Please sign in to leave a comment.