Ondrej Klempir DNAnexus Team
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Recent activity by Ondrej Klempir
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Sorry for not being clear, the sentence "Since DNAnexus files are immutable, whenever you save the notebook, the current version should be uploaded to the project and replaces the previous version,...
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You can try to combine dx upload & dx rm into a one-liner, alias or shell script (and have it activated ideally as a part of the JL snapshot), i.e. first delete the file(s) with given name and then...
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Lara says: On a similar note, is there a way to edit Python scripts either within a Jupyter Lab session or elsewhere on DNAnexus, without having to download and reupload them with each set of chang...
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Lara says: One alternative is running "dx download my_function_notebook" at the start of each notebook, but this is not optimal, as then I'd have to re-upload and download that notebook each time I...
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Lara says: Normally, I would just save these functions in a Python script and import them at the top of my notebook.Ondrej replies: I think that this is what DX JupyterLab snapshot offers. You wil...
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Hello, I think that content in the following two webinars might help here: https://www.youtube.com/watch?v=hVDbE1EykXA&t=1337s (talking about reproducibility on RAP using RStudio and some methods t...
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Hi Eric, in case you have already resolved this - would you be able to share your solution here?
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I think this documentation page could help you to get more information about Data Updates:https://dnanexus.gitbook.io/uk-biobank-rap/getting-started/updating-dispensed-data
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The error message 'low disk space during this job' is telling you that there is no space left on storage. Selecting an instance type with a larger storage should you help you to resolve this issue....
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Table exporter (https://ukbiobank.dnanexus.com/app/table-exporter) has an option for UKB-style headers. In addition, you may consider writing a function which converts the UKB trait IDs to the form...
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