Ondrej Klempir DNAnexus Team
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Recent activity by Ondrej Klempir
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Hello @Elena Jolkver?, have you received any answer back from UKB? I would be really interested in knowing how to read this data in Python.
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The 'dx run' command should have parameter --instance-type, implemented for this case. See more at https://documentation.dnanexus.com/user/running-apps-and-workflows/running-apps-and-applets#speci...
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Hi Bo, I noticed you did more testing and shared you findings with our Support team. Please, update this thread with the solution once this is resolved.
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Hi Bo! I noticed that our Support team is helping you with this issue. Please share your project with them and they will be able to assist you.
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You can monitor your jobs either via CLI (use dx watch command) or via GUI (see the jobs at Monitor tab) and access job log.Info about memory/disk space is contained in the job log. Info about inst...
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SE is also mentioned in the github thread above. I think that pval 0 and SE 0 relate to significant hits. I saw your question to SAIGE team, so they will likely know more.
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See the following github thread, https://github.com/weizhouUMICH/SAIGE/issues/117. If I am not mistaken, it is likely that the values are of are high-impact on the trait, so the resulting pval is c...
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Hello {@005t000000BBrFkAAL}?, Nvidia made the index file publicly available. From a command line interface, you can run: wget -O parabricks_sample.tar.gz \https://s3.amazonaws.com/parabricks.sample...
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A step-by-step tutorial for running Matlab on RAP is now published here: https://community.dnanexus.com/s/question/0D5t000004AfobvCAB/howto-run-matlab-on-rap
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When I used even more resources (10 nodes, mem3, 16 CPU) I got results approximately in 1 min.
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