Ondrej Klempir DNAnexus Team
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Recent activity by Ondrej Klempir
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1) I think you will need to decide which files you want to work with (WES / WGS, VCF / pVCF). This protocol applies to all UK Biobank whole exome sequencing data sets, including 200k, 300k, 450k, a...
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Good question! Yeah, I think it would mostly depend on the technical skills and if user can interact with RAP using command line interface. For those who prefer GUI, Table Exporter and Cohort Brows...
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And +1 to your question "I'm curious how folks decide which method they will use for their research?" I would love to hear from others what would be their method of choice.
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It should be downloadable by clicking Download button
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OK, I see. I refer here to the part 2a). You can use dx extract_dataset query_of_the_week_1 --dump-dataset-dictionary. This will give you the full dictionary in csv format. query_of_the_week_1.data...
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Hi @Alexandra Lee?, do you know which github file could store this info?
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Is this the list? https://biobank.ndph.ox.ac.uk/showcase/schema.cgi?id=1 https://biobank.ndph.ox.ac.uk/showcase/download.cgi
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I use a lot this catalog: https://biobank.ndph.ox.ac.uk/showcase/list.cgi Alternatively, I sometimes search Field name for given Field title in Cohort Browser.
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OK, I ran two experiments with field names and it worked. For both, I used the cohort created for purposes of the Query of the week #1. Please double check formatting of the items in your file and ...
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Yes, this is exactly what I did! Thanks for adding this comment.
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