Ondrej Klempir DNAnexus Team
Comments
Recent activity by Ondrej Klempir
-
Hi @Ben Busby? and @Rosemary Walmsley?. Were you able to get more information about this topic?
- View comment
- 0 votes
-
I really like the way to interact with the DNAnexus platform via API in Python. This can be done by using the DNAnexus Python Bindings (dxpy package, dxpy.api module). The documentation is availab...
- View comment
- 0 votes
-
Hi @Li Ping?, Thanks for sharing. Please report it to ukbiobank-support@dnanexus.com, the technical team will be able to take a look at this and they can report it to DNAnexus Product team for cons...
- View comment
- 0 votes
-
Hi @Karsten Suhre?, thanks for sharing your observation with Community. Which field id you use? Is this post related to the previous discussion here? https://community.dnanexus.com/s/question/0D5t0...
- View comment
- 0 votes
-
Yes, that is the case.
- View comment
- 0 votes
-
Inside the Apache Spark job, you can submit spark to cluster either via dx-spark-submit or via $SPARK_HOME/bin/spark-submit https://documentation.dnanexus.com/developer/apps/developing-spark-apps#s...
- View comment
- 0 votes
-
(dx-)spark-submit is part of Apache Spark cluster. This is available for Spark based app(let)s, so definitely not part of Cloud Workstation. For Apache Spark and spark submit utility, dxapp.json mu...
- View comment
- 0 votes
-
Hi @Jeremy Schwartzentruber?, I believe that Spark is available on the UKB RAP, and no additional license is required. The doc page and licensing info is IMO mostly related to the Apollo DNAnexus p...
- View comment
- 0 votes
-
For the brain imaging, the bulk *NIFTI* packages include the raw data as well as images created by the processing pipeline - eg including masks etc.
- View comment
- 0 votes
-
Hello {@005t000000Aqg0DAAR}? , In my opinion, it does not seem to me that unzipping bulk files would be a good candidate for Spark paralellization. It would be possible to parallelize in batch mode...
- View comment
- 0 votes