Oliver G
UKB Community team
Data Analyst
Comments
Recent activity by Oliver G
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Hi Fidel Alfaro Almagro & @...,Nicholas' logic example does seem to indicate that the mask 5a thresholding isn't a sub-threshold of mask5. I've read the documentation and have come to the same inte...
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The source of this issue has been identified as “misallocating V2 FLAIRs to V1 T1ws”. No need for a follow up at the moment.
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Thanks Fidel!
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Hi Sebastian,The T1_brain.nii.gz and rfMRI.nii.gz files are not in MNI, but are aligned to each other.As a consequence the warps provided in the transforms subfolder of the T1 directory should be s...
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The following provides an example for using docker (although it uses the wdl workflow language rather than applets for the coordination of the jobs):https://github.com/UK-Biobank/UKB-RAP-Workflows/...
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Hi Esra,Apologies for the slow reply. We are planning to release some resources on the UK Biobank GitHub (https://github.com/UK-Biobank) account and on this community site over the next few months ...
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Hi Juhyeong,The images available within field 20252 should have only the T1_orig_defaced.nii if the T1 was deemed of overly low quality for full processing through the UK Biobank brain imaging pipe...
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Hi Lidia,Apologies for our delay in getting back to you. DNAnexus have identified that FSL has not been properly configured within the .bashrc profile.As a result, on starting the jupyterlab each t...
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Hi Baptiste,These are available in the bulk data folders in field 20250.https://biobank.ndph.ox.ac.uk/showcase/field.cgi?id=20250There are images available from TBSS and dti in separate subfolders ...
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Hi Lidia, Thanks for picking up on this. I have just tried and failed to run FEAT myself (I tried without nipype, and with and without parameters, and it no outputs or messages are provided) and I ...
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