Ted Laderas DNAnexus Team
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Latest activity by Ted Laderas
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Ted Laderas commented,
Great. Hope it's helpful.
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Ted Laderas commented,
My Bad. That repository was private - I've made it public. I hope it works now
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Ted Laderas commented,
Hi Arezoo - The link is a direct download link of the PDF - check your downloads folder. Unfortunately, I can't control how Github handles downloads on a release page.
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Ted Laderas commented,
Hi {@005t000000BBwZQAA1}? and {@005t000000BBzagAAD}? I think there are two main ways to do this (maybe {@005t0000006BZL2AAO}? and others can chime in here): 1) Use PLINK in the Swiss Army Knife a...
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Ted Laderas commented,
Hi Alex, You can query the "field_id" property to pull pVCFs and such. This one will pull the 450k release pVCFs (https://biobank.ndph.ox.ac.uk/showcase/field.cgi?id=23148) dx find data --property ...
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Ted Laderas created a post,
dxhelper R package for decoding Phenotype Data
Hi Everyone, I know that working with pheno data can be difficult. If you are using the new dx extract_dataset functionality, the pheno data is returned as raw values, and categorical variables n...
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Ted Laderas commented,
Just keep in mind that it is currently read only. You won't be able to do something like write.csv(my_file, "/mnt/project/my_folder/myfile.csv") - you'll have to use dx upload to get results off of...
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Ted Laderas commented,
Hi Yong, I believe that is because of how the platform is designed. Folders themselves are not data objects on the platform, they are represented in the metadata for each of the data objects. Henc...
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Ted Laderas commented,
Hi Yong, If you prepend a /mnt/project/ to the beginning of your file paths (such as /mnt/project/Bulk Files/...), you can utilize the dxFUSE file system to access files from the project storage wi...
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Ted Laderas commented,
Thanks for finding these errors, Rob. We will update the example and cheatsheet.
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