Ted Laderas DNAnexus Team

Great. Hope it's helpful.

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• 13 September 2023 21:26
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My Bad. That repository was private - I've made it public. I hope it works now

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• 13 September 2023 19:00
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Hi Arezoo - The link is a direct download link of the PDF - check your downloads folder. Unfortunately, I can't control how Github handles downloads on a release page.

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• 13 September 2023 17:32
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Hi {@005t000000BBwZQAA1}? and {@005t000000BBzagAAD}?  I think there are two main ways to do this (maybe {@005t0000006BZL2AAO}? and others can chime in here): 1) Use PLINK in the Swiss Army Knife a...

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• 10 April 2023 15:42
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Hi Alex, You can query the "field_id" property to pull pVCFs and such. This one will pull the 450k release pVCFs (https://biobank.ndph.ox.ac.uk/showcase/field.cgi?id=23148) dx find data --property ...

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• 06 April 2023 15:22
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dxhelper R package for decoding Phenotype Data

Hi Everyone,   I know that working with pheno data can be difficult. If you are using the new dx extract_dataset functionality, the pheno data is returned as raw values, and categorical variables n...

• Ted Laderas
• 13 December 2022 00:00
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Just keep in mind that it is currently read only. You won't be able to do something like write.csv(my_file, "/mnt/project/my_folder/myfile.csv") - you'll have to use dx upload to get results off of...

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• 25 February 2022 00:47
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Hi Yong, I believe that is because of how the platform is designed. Folders themselves are not data objects on the platform, they are represented in the metadata for each of the data objects.  Henc...

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• 25 February 2022 00:45
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Hi Yong, If you prepend a /mnt/project/ to the beginning of your file paths (such as /mnt/project/Bulk Files/...), you can utilize the dxFUSE file system to access files from the project storage wi...

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• 24 February 2022 20:59
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