Alexandra Lee DNAnexus Team
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Recent activity by Alexandra Lee
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Hi Richa, What error are you running into? Is this an error getting the tensorflow app installed (following the instructions in github here: https://github.com/dnanexus/dnanexus-example-applets/tre...
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Thanks so much Ondrej, One of the things I'm interested in doing is being able to re-run an analysis after adjusting the input and this is a great trick that I can use for updating the json and re-...
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See https://community.dnanexus.com/s/question/0D5t000004RYPRNCA5/dna-nexus-and-nextflow
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Here is what I did that worked: run_merge=?cp /mnt/project/Bulk/Genotype\ Results/Genotype\ calls/ukb22418_c[1-9]* . ; ls *.bed | sed -e 's/.bed//g'> files_to_merge.txt; plink --merge-list files_to...
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Hi Ilaria, I don?t think you need to use the mounted files (i.e. `/mnt/project/`) with the -icmd params for your command. So you can use `ad_risk_by_proxy_wes.phe` instead of `/mnt/project/ad_risk_...
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It looks like you're using `/mnt/project/ in your `-iin` params. Maybe try removing the mounted file path
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I think you need to click on the appXXX dataset to open the Cohort Browser: https://documentation.dnanexus.com/user/cohort-browser Also, as @Anastazie Sedlakova? mentioned, you can search in the UK...
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Hi Anoop, In general the "Bulk" data folder contains quantitative measurements associated with participants - i.e. genomic sequencing data, imaging data, biometric data. For phenotypic data associa...
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Thank you for sharing this information Ondrej, I'm curious how folks decide which method they will use for their research? Are there methods that are more suitable for certain analyses?
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As far as I know, I don't believe this is on the website or inside the RAP project. To get the coding_dictionary.csv file you can do the following: Make sure you have dxpy installed on your local m...
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