Alexandra Lee DNAnexus Team
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Recent activity by Alexandra Lee
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I think you need to click on the appXXX dataset to open the Cohort Browser: https://documentation.dnanexus.com/user/cohort-browser Also, as @Anastazie Sedlakova? mentioned, you can search in the UK...
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Hi Anoop, In general the "Bulk" data folder contains quantitative measurements associated with participants - i.e. genomic sequencing data, imaging data, biometric data. For phenotypic data associa...
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Thank you for sharing this information Ondrej, I'm curious how folks decide which method they will use for their research? Are there methods that are more suitable for certain analyses?
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As far as I know, I don't believe this is on the website or inside the RAP project. To get the coding_dictionary.csv file you can do the following: Make sure you have dxpy installed on your local m...
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Hi Yimei, Here is the github link that I pointed to during the overview webinar: https://github.com/dnanexus/OpenBio/blob/master/dx-toolkit/dx_extract_dataset_r.ipynb This github doesn't contain th...
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Looks like you should have access to this as a RAP user: https://dnanexus.gitbook.io/uk-biobank-rap/working-on-the-research-analysis-platform/managing-usage-and-storage-costs#smart-reuse-testing-wo...
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Hi Pierre, Maybe something like `reuse` is what you're looking for: https://documentation.dnanexus.com/user/running-apps-and-workflows/job-reuse Looks like you may be able to add it as a parameter ...
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Here are steps for getting started using nextflow on the cloud workstation
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re: Is there a way to replace previous versions of notebooks instead of building numerous copies? Let's say you saved your jupyter notebook on your project platform (permanent). Now you want to edi...
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I'm not sure if this data exists for the case proteomics samples, but its available for the control samples: https://biobank.ndph.ox.ac.uk/showcase/rectab.cgi?id=1071 Perhaps you can try reaching o...
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