Former User of DNAx Community_18

restart jobs that have SpotInstanceInterruption

I know this has been discussed previously but this is more of a feature request. It seems we can use --property to set some key/value pairs for executionPolicy and that has members restartOn/maxRes...

• Former User of DNAx Community_18
• 07 February 2023 00:00
• 1 follower
• 1 comment
• 0 votes

Well that is embarrassing! I can confirm it is working now.  Thanks again, Jared

• View comment
• 04 November 2022 20:58
• 0 votes

Thanks Chai.

• View comment
• 04 November 2022 01:56
• 0 votes

How to provide a Struct as an input to a WDL workflow.

I'm trying to provide an Array of these structs: ```struct VcfChunk { String chrom String start_pos String end_pos File vcf File csi}``` to a workflow via json and am receiving this cryptic e...

• Former User of DNAx Community_18
• 04 November 2022 00:00
• 2 followers
• 3 comments
• 0 votes

Is it possible to ensure VCF indices (and other secondary files) are localized to the same directory in WDL?

Simple example:   input { File vcf File csi } command <<< bcftools view -r chr1 ~{vcf} >>>   this fails because the .csi file is not localized to the same dir. I think I can ha...

• Former User of DNAx Community_18
• 02 November 2022 00:00
• 2 followers
• 2 comments
• 0 votes

Kind of both. I'm trying to do a scatter-gather with wdl (here is the code). So each file is first processed independently (so 60K jobs) and then those outputs are processed together in one job. T...

• View comment
• 06 October 2022 16:06
• 0 votes