Former User of DNAx Community_5

Issue with exporting 'eid' using Table Exporter

I noticed that Table Exporter always runs into problems when exporting 'eid'.   For example, the job below seems alright in terms of syntax, but it ran forever, and I had to terminate it after 14 h...

• Former User of DNAx Community_5
• 24 May 2023 00:00
• 6 followers
• 5 comments
• 2 votes

Thank you. I tried ssd2 and it still failed. In the end, I had to recode data for one chromsome at a time, which finally worked. Thanks!

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• 22 May 2023 21:34
• 0 votes

Thanks for your reply. Do you mean slide 24 of the webinar about instance type? My initial submission is mem1_ssd1_v2_x16, which failed with the 'Low scratch storage space' error message. Then I r...

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• 21 May 2023 20:58
• 0 votes

Low scratch storage space when recoding PLINK files to VCF

Hi,I got an error message when recoding PLINK files to VCF files. I wonder if there is anyway to get around the issue. Thanks in advance.Here is the error message:PLINK v2.00a3.1LM 64-bit Intel (19...

• Former User of DNAx Community_5
• 20 May 2023 00:00
• 2 followers
• 5 comments
• 0 votes

How to access extracted phenotypes?

Hi, I have extracted phenotype data and want to process the data in R. I followed the RAP tutorial to start an R session, but I am unable to download the data to the Rstudio server using dx-toolki...

• Former User of DNAx Community_5
• 08 May 2023 00:00
• 1 follower
• 1 comment
• 0 votes