Former User of DNAx Community_35

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• 07 December 2023 07:06
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Version of the Annotation Database when running the snpEff tool

I got the reference genome GCA_000001405.15 for this cram file by comparing it to the 2013 version, but this GRCh38.p13 is from later 2019, I see that snpEff's help file states that the default is ...

• Former User of DNAx Community_35
• 07 December 2023 00:00
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Thank you for your helpful answer! I will try it.?

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• 17 October 2023 02:03
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Selection of the GFF file version

The full name of the reference genome in UK Biobank is GRCh38_full_analysis_set_plus_decoy_hla.fa, and the version number of the gene used is GCA_000001405.15, which is the initial version of GRCh3...

• Former User of DNAx Community_35
• 12 October 2023 00:00
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I have found a way to view the md5 value of the file, thanks!

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• 14 September 2023 02:07
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Hi! I want to download large files locally, how can I get the md5 value of the files on the RAP platform?

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• 13 September 2023 13:19
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This is the screenshot. I'm running Mutectcaller (Parabricks accelerated) app  with the cram file and the tar.gz using just the 5 files including .pac, .ann, .amb, .bwt and .sa. The index files are...

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• 12 September 2023 14:12
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I am also planning to use Mutectcaller (Parabricks accelerated) app to call somatic mutations and I'm having the same problem as you, I uploaded the reference file in .gz format and indexed it with...

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• 12 September 2023 08:21
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