Former User of DNAx Community_19

How to run Genome-wide survival association analysis in DNAnexus?

I'd like to know if anyone has used any of the programmes below on the DNAnexus platform or if they have any advice regarding using them.   - https://academic.oup.com/genetics/article/215/1/41/5930...

• 08 July 2023 00:00
• 1 follower
• 1 comment
• 0 votes

There is a tutorial regarding how to use SAIGE (https://documentation.dnanexus.com/science/scientific-guides/saige-gwas-walkthrough), but here it was not mentioned the GATE (https://github.com/weizhou0/GATE#uk-biobank-gwas-results)

Is it possible to advise on how to use GATE through SAIGE on dnanexus?

• 06 May 2023 00:00
• 3 followers
• 3 comments
• 0 votes

I'm wondering if it's possible to understand dates of recurrent diseases in Summary Diagnoses of UKB. For example, an individual was diagnosed with lung cancer in 2010. and again diagnosed with lung cancer (same ICD code) in 2017.

• 09 March 2023 00:00
• 2 followers
• 4 comments
• 0 votes

I am wondering if there is any way/software on DNAnexus platform to call somatic mutations on UKB data?

• 05 October 2022 00:00
• 5 followers
• 32 comments
• 0 votes