Former User of DNAx Community_34

Member since 11 January 2024 01:27

Total activity 6

Last activity 11 January 2024 01:33

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Latest activity by Former User of DNAx Community_34

Former User of DNAx Community_34 commented, 28 April 2023 20:21
Hey @Burcu Çevik? , I have had success with the command: samtools view -H output.bam It prints out a lot of information, but after sifting through, I am usually able to find my read group.
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- 28 April 2023 20:21
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Former User of DNAx Community_34 commented, 07 April 2023 22:32
Hey @Ondrej Klempir? Yeah I'm looking at the source code right now has some bugs in it when it comes to CRAM files. I would use BAM for now if you can while we sort it out.
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- 07 April 2023 22:32
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Former User of DNAx Community_34 commented, 20 March 2023 21:33
The easiest way, and the way that I did it, was to download that file from AWS. and zip up the Ref/ folder. You can rename the tarball anything.bwa-index.tar.gz so that the software can pick it up ...
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- 20 March 2023 21:33
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Former User of DNAx Community_34 commented, 15 March 2023 21:30
Hello @Ra S? , We've recently added a version of mutect2 called MutectCaller from the Parabricks GPU accelerated genomic analysis software. Does that satisfy your needs?
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- 15 March 2023 21:30
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