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Former User of DNAx Community_51

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Latest activity by Former User of DNAx Community_51

  • Former User of DNAx Community_51 commented,

    Hello Chai, I actually directly query the bgen files with custom python code, but I would imagine if you run something like: bgenix -g <.bgen> -incl-rsids <some rsid from that chromosome> It should...

  • Former User of DNAx Community_51 created a post,

    Issue with GEL Imputation .bgi Indicies

    I previously reported that the SAMPLE IDs in the .bgen files provided as part of the GEL imputation release were incorrect and specific to the source project that created them. This appears to have...

    • Former User of DNAx Community_51
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  • Former User of DNAx Community_51 commented,

    Hello Anastzie, Thanks for including in this thread. Would be good to get to the root of the issue, because if the problem is found in just a small selection of SNPs based off of an analysis, then ...

  • Former User of DNAx Community_51 commented,

    Thanks for the quick reply, Chai. 1) You are correct that the rsid field is populated in the bgen file, but not in the .bgi file. The .bgi file is helpful if I want to query individual variants ra...

  • Former User of DNAx Community_51 created a post,

    Potential issues with imputed data

    Hello,   I've been analysing the new imputed data (TOPMed and GEL) and have noticed some formatting issues and wanted to see if anybody else encountered them before I report them to UKBB:   - The ....

    • Former User of DNAx Community_51
    • 5 followers
    • 7 comments
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