Former User of DNAx Community_66
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Latest activity by Former User of DNAx Community_66
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Former User of DNAx Community_66 commented,
ok thank you @Anastazie Sedlakova?
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Former User of DNAx Community_66 commented,
Thanks @Ondrej Klempir? , will wait for @Anastazie Sedlakova? ?
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Former User of DNAx Community_66 created a post,
Mapping ICD10 codes from field 41270 via PheWAS R package using createPhenotypes results in only ~1250 phenotypes. Does anyone know how to get ALL the phenotypes in the UKB - but particularly all related to mental disorders?
Hi UKB community, Has anyone managed to run the PheWAS package and get all the phenotypes in the UKB? I've been following the DNAnexus end_to_end_gwas_phewas tutorial, I successfully create the phe...
- Former User of DNAx Community_66
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Former User of DNAx Community_66 commented,
Hi @Ondrej Klempir? , Did you by any chance manage to look into this issue? Alternatively is there anyone I could try to contact instead? Thanks,Krzys
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Former User of DNAx Community_66 commented,
Hi Ondrej,Please see my responses: 1) no - not even the smallest files produced by Hail/Spark get saved to local storage, however, smaller files "finish running in the cell" but there is nothing sa...
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Former User of DNAx Community_66 created a post,
Unable to save Hail output files
Hi folks, Did anyone manage to run GWAS in Hail and successfully save summary stats to the workspace? I've left the files saving for up to a couple of hours yet no files are saved to the workspac...
- Former User of DNAx Community_66
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