Former User of DNAx Community_33
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Recent activity by Former User of DNAx Community_33
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Results of fewer SNPs total after using PJ Greer's scripts for Regenie using Plink genotype calls and final WES.
I used PJ Greer's scripts to perform GWAS, using my phenotype on UKB RAP, genotype array data, then the full final exome sequencing for step 2. I did (as far as I know) all the quality control step...
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Does anyone have a good tutorial on Eigensoft for use in DNAnexus?
My understanding is that it is important to have PCA's based on cases and controls specific to the phenotype to be analyzed in GWAS. I have fashioned the appropriate files (I think), consistent wit...
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