Former User of DNAx Community_28

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• Utility of Hardy-Weinberg Equilibrium filtering in UKB genomic data: p<1e-15 is not a good cutoff.

  This is less of a question and more of a discussion point. Feel free to chime in in the comments. I got a comment on my GWAS git repo about why I did not include a hwe filter on my QC step and thou...

  • 30 November 2022 00:00
  • 2 followers
  • 2 comments
  • 0 votes

• Performing GWAS on RAP using DX toolkit and swiss-army-knife

  First, I want to thank DNANexus for the tutorials offered to date. They have done a tremendous amount of work and I am in their debt. Currently I feel that DX toolkit is the most powerful way to in...

  • 22 August 2022 00:00
  • 8 followers
  • 30 comments
  • 0 votes

• Should there be a pruning step in the REGENIE step1 workflow?

  I noticed there is no pruning step in the b37 to grch38 liftover, nor in the regenie QC workflow on github.   The pruning step is mentioned in the nature paper, and LD pruning is commonly used to ...

  • 26 January 2022 00:00
  • 2 followers
  • 2 comments
  • 0 votes