Former User of DNAx Community_22
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Recent activity by Former User of DNAx Community_22
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Effectively querying genotypes from the Spark genotype table
I am referring to the following incredibly useful table: geno=spark.sql(f"SELECT * FROM genotype_23146") geno.printSchema() While the documentation states that these genotype tables are not docum...
- 2 followers
- 4 comments
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Are UKB pVCF wes files truly bgzipped?
They have the suffix .gz, but how can I know if they are truly blocked gzipped, or not? Thanks! Or
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- 2 comments
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ExecutorLostFailure when trying to write a matrix
Another Spark issue with writing a Hail matrix: mt.write(url) fails after some time (and money) spent: "ExecutorLostFailure (executor 23 exited caused by one of the running tasks) Reason: Remote...
- 3 followers
- 6 comments
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