Former User of DNAx Community_51

Thankyou very much,Yeah something went funky with the latest release of setuptools the other day: https://github.com/pypa/setuptools/issues/3772. I should also flag that I've experienced an issue w...

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• 20 January 2023 14:25
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Does anyone know at DNAnexus know if supporting a rolling release of Hail in JupyterLab is in the works? We've shown it's possible and we would prefer not to spend this time maintaining usability f...

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• 19 January 2023 15:14
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Hail 0.2.108 released and working! This is great news - previously we've been unable to analyse UKB imputed in Hail without errors in JupyterLab...

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• 19 January 2023 15:09
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Thanks, that second link was useful - I noticed "restartableEntryPoints" which I've set to "all" to enable all entry points to be restartable. Unfortunately the same error still persists with no re...

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• 19 January 2023 15:06
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WDL "restarton" executionpolicy not being used

I'm still having issues concerning - https://community.dnanexus.com/s/question/0D5t0000048tMbUCAU/how-to-automatically-restart-jobs-upon-spotinstanceinterruption.   I am running WDL workflows and ...

• Former User of DNAx Community_51
• 18 January 2023 00:00
• 4 followers
• 5 comments
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Nice am following that release thread and will update the app asap after the hail release

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• 16 January 2023 13:09
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Hi @Jakob Madsen?  we have got the latest hail version working on a spark cluster in a DNAnexus app. It would be very helpful if you or anyone else reading this would be able to test that our app (...

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• 22 December 2022 10:04
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Hail JupyterLab EOF error

Repeatedly getting a EOF error when running QC on UKB imputed genotype data:   index_file_map = {file+".bgen":f'{database_dir}/tmp/'+file.split("/")[-1]+".bgen.idx2"} hl.index_bgen([file+".bgen"], ...

• Former User of DNAx Community_51
• 19 December 2022 00:00
• 1 follower
• 1 comment
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Thankyou very much for. your response - Hmm I've been using SpotInstanceInterruption but I'm still getting SpotInstanceInterruption errors - has anyone else been able to get his option to work?

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• 06 December 2022 14:30
• 1 vote