Former User of DNAx Community_51

WDL "restarton" executionpolicy not being used

I'm still having issues concerning - https://community.dnanexus.com/s/question/0D5t0000048tMbUCAU/how-to-automatically-restart-jobs-upon-spotinstanceinterruption.   I am running WDL workflows and ...

• 18 January 2023 00:00
• 4 followers
• 5 comments
• 0 votes

Hail JupyterLab EOF error

Repeatedly getting a EOF error when running QC on UKB imputed genotype data:   index_file_map = {file+".bgen":f'{database_dir}/tmp/'+file.split("/")[-1]+".bgen.idx2"} hl.index_bgen([file+".bgen"], ...

• 19 December 2022 00:00
• 1 follower
• 1 comment
• 0 votes

How to automatically restart jobs upon "SpotInstanceInterruption"?

Running many tasks in a WDL workflow - what execution policy should I have in my extras file in order to restart jobs upon the error "SpotInstanceInterruption" as this currently causes the whole wo...

• 28 November 2022 00:00
• 2 followers
• 3 comments
• 1 vote

dxcompile compile errors

Running dxcompiler compile I get an error saying: [error] WDL code is syntactically invalid ----- But dxcompiler does not provide any error messages, is there any way to enable more verbose errors ...

• 14 October 2022 00:00
• 1 follower
• 1 comment
• 0 votes

When running dx download within an applet does this incur an egress fee? (data downloaded from project applet is running in) Many Thanks, Barney

• 10 October 2022 00:00
• 1 follower
• 1 comment
• 0 votes