Former User of DNAx Community_34

Can one run a PBS job script using qsub in UKB RAP? Can it be done in ttyd?

• 27 April 2023 00:00
• 3 followers
• 8 comments
• 0 votes

How to run the R script faster on UKB RAP?

I have my R script, and I am taking the SNPs on 22 chromosomes as input one by one. When I was running the script on R studio on UKB RAP, it took more than 24 hours to run the task only for 10k SNP...

• 15 April 2023 00:00
• 2 followers
• 8 comments
• 0 votes

I want to perform a GWAS using phenotype and genotype data on unrelated individuals (regression). How to add phenotype, genotype, and covariates data for unrelated individuals either in Jupyter lab or Rstudio on RAP to perform my analysis.

Let's say I want to perform a linear or logistic regression as Phenotype ~ Genotype + Covariates.   I want to perform this task in the Rstudio/JupyterLab using R. I understood how to use the cohor...

• 23 March 2023 00:00
• 4 followers
• 7 comments
• 0 votes