Former User of DNAx Community_34
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Recent activity by Former User of DNAx Community_34
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Yes, you are right. Yes, the issue of dependency in R is quite annoying sometimes. This only forced me to explore Docker, something very new to me. I got to know about Docker here only and have alr...
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Thanks for telling me about the possibilities that may occur during learning Docker. They'll be quite helpful, I am sure.
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Hi, Chai,Thanks for your explanation. I have 5 multiple linear regressions in my code, which are regressed upon genotypes of individual SNPs. On 22 chromosomes, there are around 600k SNPs. All I n...
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Yes, I am talking about the same discussion. As you suggested: I ran the R script in SAK. It worked and was cost-efficient but not time efficient. You suggested learning about docker images as some...
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Thanks @Chai Fungtammasan?. I use the webinar commands only to run my script in R. Why is the same R script slower in SAK than in Rstudio, even after using higher instances?
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I have watched that webinar. I wondered if I could because my R script is taking more time to run in SAK ( even more time than the R studio workbench). So I thought I might try PBS as well.
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Okay, Thanks @Chai Fungtammasan? and @Ondrej Klempir? for all the support.
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Hii Ben!I have a question. Let's say I want to perform a linear or logistic regression as Phenotype ~ Genotype + Covariates. I want to perform this task in the Rstudio/JupyterLab using R. I unders...
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Hi Chai, I was trying to implement your suggestions to run my Rscript in SAK. But I was facing problems loading the R packages as there is an older version of R in SAK. I have contacted the support...
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Hii @Ted Laderas? ,Many of us are interested in a similar problem. I have created a cohort and extracted the phenotype and covariates to a CSV file using the cohort browser. I have 3,25,125 partici...
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