Former User of DNAx Community_48

It's not a data field, but the imputed genotype data in the bulk folder. I do something like this: ln -sf /mnt/project/Bulk/Imputation/UKB imputation from genotype/ impu bgenix -g impu/ukb22828_c6_...

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• 03 July 2023 18:01
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The latter error is a problem, as bgenix recovers and continues to work, but some SNPs just miss from the analysis. No I am screening my log files for this error to make sure everything is in order...

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• 26 June 2023 21:42
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Does anybody else encounter random read errors when reading imputed genotypes ?

Hi!   I am running scripts that read the imputed UKB data with bgenix using swissarmyknife.   On some occasions the job fails with:    ExecutionError: Detected slow performance in the worker's file...

• Former User of DNAx Community_48
• 26 June 2023 00:00
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How to obtain an updated Authorization key (.ukbkey) to download returned data?

Hi! I would like to use a returned data set on UKB RAP (actually - the ancestry groupings). From my previous post I understand that I need to use the Showcase:  https://community.dnanexus.com/s/que...

• Former User of DNAx Community_48
• 22 October 2022 00:00
• 1 follower
• 1 comment
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How to access returned data sets using the cohort browser

I understand that the Pan-ancestry genetic analysis of the UK Biobank defined a series of ancestries. How can I access these ancestry definitions inside the UKB RAP platform so that my analyses are...

• Former User of DNAx Community_48
• 21 October 2022 00:00
• 1 follower
• 1 comment
• 0 votes