Former User of DNAx Community_48

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• Does anybody else encounter random read errors when reading imputed genotypes ?

  Hi!   I am running scripts that read the imputed UKB data with bgenix using swissarmyknife.   On some occasions the job fails with:    ExecutionError: Detected slow performance in the worker's file...

  • 26 June 2023 00:00
  • 3 followers
  • 5 comments
  • 0 votes

• How to obtain an updated Authorization key (.ukbkey) to download returned data?

  Hi! I would like to use a returned data set on UKB RAP (actually - the ancestry groupings). From my previous post I understand that I need to use the Showcase:  https://community.dnanexus.com/s/que...

  • 22 October 2022 00:00
  • 1 follower
  • 1 comment
  • 0 votes

• How to access returned data sets using the cohort browser

  I understand that the Pan-ancestry genetic analysis of the UK Biobank defined a series of ancestries. How can I access these ancestry definitions inside the UKB RAP platform so that my analyses are...

  • 21 October 2022 00:00
  • 1 follower
  • 1 comment
  • 0 votes

• How can I estimate the resources that an AWS instance used after a run?

  Hi!   I am developing an analysis (e.g. a GWAS). As I intend to run the final job hundreds of times, I like to determine the optimal configuration of my AWS instance (memory, number of CPUs, ssd ve...

  • 05 January 2022 00:00
  • 1 follower
  • 1 comment
  • 0 votes