Former User of DNAx Community_10
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Latest activity by Former User of DNAx Community_10
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Former User of DNAx Community_10 commented,
I would like to use this code to get the same table. I have the project ID. project-GJB3GpQJBJkYK0j74jp4vJZ9How do I get the record ID.Will the rest of the code run.
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Former User of DNAx Community_10 created a post,
How can I estimate the recombination frequency of these 2 genes rs73182688 NLGN1 3q26.31 depression rs1501299 ADIPOQ 3q27.3 G>T BMI
- Former User of DNAx Community_10
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Former User of DNAx Community_10 created a post,
I am trying to extract a specific snip from ukb22418_cMT_b0_v2 the mitochondrial hard called chromosome file, The snps are labeled with Affx-, not rs... How do I extract a specific snp, for example Affx-34461959. The usual plink command doesn't work
- Former User of DNAx Community_10
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Former User of DNAx Community_10 created a post,
mitochondrial DNA copy number (CN) estimation--how do I do it?
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Former User of DNAx Community_10 commented,
Plink GWAS on RAP produces a single txt output fileplink_gwas.plink2.PHENO1.glm.logistic.assoc.txtThe file has 12 columns#CHROM POS ID REF ALT A1 TEST OBS_CT OR LOG(OR)_SE Z_STAT PThe file I got h...
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Former User of DNAx Community_10 created a post,
Using PLINK GWAS tool on the RAP generates a text output file with many duplicates. How do I get rid of the duplicates?
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Former User of DNAx Community_10 created a post,
I used RAP tool to do a PLINK GWAS but results did not include X or XY files, only 22 autosomes. How do I include X and XY chr files.
- Former User of DNAx Community_10
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Former User of DNAx Community_10 commented,
Once I've run 16a, how do I turn the results into a txt file I can use with locuszoom
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Former User of DNAx Community_10 commented,
It might be working. It is generating multiple ukb22828 bed bim fam files. I guess they just have to be merged when finished.
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Former User of DNAx Community_10 commented,
I created directory and phenotype file as below"/gwas_cohort_textfiles/phenotypes.v08-04-22.txt" This is what app was looking forDXCLIError: Value provided for input field "in" could not be parsed ...
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