Former User of DNAx Community_10
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Recent activity by Former User of DNAx Community_10
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I want to run without covariates and used this code instance_type="mem1_ssd1_v2_x4"traitType=binaryinvNormalize=FALSEphenoCol=valuesampleIDCol=userIdpheno_file=phecode-250.2-both_sexes_wowithdrawl_...
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Dear Wei,Here is the output before the job failed for lack of memory, Can you see anything wrong?[lehres01@li03c03 UKBGWAS]$[lehres01@li03c03 UKBGWAS]$ #!/bin/bash[lehres01@li03c03 UKBGWAS]$ #BSUB...
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Dear Wei,I used this code on the ukb 22418 hard coded filesplink --bfile ukb_cal_chr1_22_v2_merged --indep-pairwise 50 5 0.05 --out tmp1plink --bfile ukb_cal_chr1_22_v2_merged --extract tmp1.prune....
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Dear Wei,I pruned the files further so that there are no AFR samples, only white British, but still not enough memory. I have to use singularity on an academic mainframe rather than docker, but I d...
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Ran command line on DNAnexus CLI running on mainframe with linux, worked fine! Just will not work on DNAnexus CLI running on win10 PC.
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I am getting this error. What do I do?72 threads are set to be usedsparse GRM will be createdMarkers in the Plink file with MAF < 0.01 will be removed before constructing GRMMarkers in the Plink fi...
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I uploaded saige_1.0.9.tar.gz dxCompiler-2.10.1.jar I created folder workflowI ran your command in Swiss Army Knifejava -jar dxCompiler-2.10.5.jar compile saige_null_sGRM_vr_withinfo.wdl -project $...
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Do I use ukb22418 files to create the pruned plink file; if not, which do I use
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I modified command linejava -jar dxCompiler-2.10.5.jar compile saige_null_sGRM_vr_withinfo.wdl -project $57245 -folder /workflows/ -fand got this PS D:\> java -jar dxCompiler-2.10.5.jar compile sa...
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The saige file I was using was SAIGE_1.0.9.tar.gx. I renamed with lower case saige_1.0.9.tar.gz and get this errorA job in the job tree named "null" running function "main" of "null" failed because...
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