Former User of DNAx Community_6

How the vcf files were formatted and how to process the vcf files.

Hello, I am looking for ways to process the vcf files. I tried processing using the swish alpha knife and took a long time to upload the data to the cloud. I also observed for each chromosome, we h...

• 17 October 2022 00:00
• 1 follower
• 1 comment
• 0 votes

I am looking for NMR metabolites in UKB RAP phenotypes. I have a few questions: 1.) May I know how many NMR metabolites are in UKB RAP? 2.) Can you help how to find all metabolites? 3.) What QC steps generally were followed?

• 14 October 2022 00:00
• 2 followers
• 5 comments
• 0 votes

Hello, I am trying to generate phenotypes with Time to Events for the survival analysis I want to conduct. Did anyone generate these before if so Please do let me know how to do it. Thank you so much for the help..

• 14 October 2022 00:00
• 1 follower
• 3 comments
• 1 vote

I am trying to find WGS vcf files. I see individual-level vcf files per sample. Where can I find joined called vcf files for WGS located? Please do let me know how to access those and use them for the extraction of the gene region I am interested in.?

• 12 October 2022 00:00
• 2 followers
• 8 comments
• 0 votes