Former User of DNAx Community_91

Hi- I ran the GWAS analysis using SAIGE and I had a very nosiy QQ plot and Manhattan plot. I just realized that I have not run QC steps on the imputed data. Is there a good resource on the QC steps before SAIGE analyses? Best- Nihal

• 28 February 2023 00:00
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I am hoping I can have a script to run SAIGE GWAS on Dx command line using bgen files. Best- Nihal

The sample file: ukb22828_c1_b0_v3_sample.txt (there is a file for each chr) The bgen file: ukb22828_c22_b0_v3.bgen (there is a file for each chr) The Bgi file: ukb22828_c22_b0_v3.bgen.bgi   Other...

• 21 December 2022 00:00
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If I do not see the BIM, MAP, FAM files on my approved database, does this mean that I do not have access to genotype results of chromosomes 1-22?

• 05 June 2022 00:00
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