Former User of DNAx Community_98
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Latest activity by Former User of DNAx Community_98
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Former User of DNAx Community_98 commented,
Thank you for the answer! How did you reach out to the DNAnexus dxCompiler experts? (In case I need to in the future)
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Former User of DNAx Community_98 created a post,
How can I verify that a WDL workflow previously compiled with dxCompiler was compiled with the -streamFiles flag?
I don't see any indication of streaming when I run `dx describe --verbose --json ` or `dx describe --verbose --json `, and I want to make sure that this worked. I was expecting to see something, p...
- Former User of DNAx Community_98
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Former User of DNAx Community_98 created a post,
How do I call the table_exporter applet from my WDL?
I've tried running dxcomplier dxni as described here dxCompiler/ExpertOptions.md at develop · dnanexus/dxCompiler (github.com) but table-exporter isn't in my project (it's vended by DNAnexus) and I...
- Former User of DNAx Community_98
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Former User of DNAx Community_98 commented,
Thank you both. Per both of your suggestions, I'm trying to use the native DNAnexus applet table_exporter to do the work for me and chain it together with WDL. But I'm running into some issues, whi...
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Former User of DNAx Community_98 created a post,
I would like to access phenotype data from within a WDL task using a python script. How do I localize the database file as an input to the task? I'm getting a wrong type error.
I'd like to do something similar to this jupyter notebook https://github.com/dnanexus/OpenBio/blob/master/UKB_notebooks/ukb-rap-pheno-basic.ipynb , but in a python script that is executed in a WDL ...
- Former User of DNAx Community_98
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- 3 comments
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