Former User of DNAx Community_13
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Recent activity by Former User of DNAx Community_13
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Variants imputed or sequenced in BGEN file
I am working with BGEN imputed files at Bulk/Imputation/UKB imputation from genotype. Is there any way to know if a given variant in the BGEN file has been imputed or directly sequenced? I am using...
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index_bgen in RAP using imputation files
Hello!I am following the instructions provided at https://github.com/dnanexus/OpenBio/blob/master/hail_tutorial/BGEN_import.ipynb to try to use UKB bgen files with Hail. from pyspark.sql import Spa...
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