Gabriel Doctor

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• Speed/throttling when submitting 1000s of jobs

  HiPlease could you let me know if there is any constraint against queing up e.g. 1000 or 2000 jobs to be done as  lowpriority workers become available? the jobs are accessing a few small similar fi...

  • 21 March 2025 16:42
  • 3 followers
  • 4 comments
  • 0 votes

• Optimising speed of extracting specific loci from WGS

  I am trying to get info from c500,000 loci scattered throughout genome (basically allele freqs of whole UK pop at specific sites). That means that I need to access thousands of VCF for chunked regi...

  • Edited 26 November 2024 10:46
  • 2 followers
  • 1 comment
  • 0 votes

• Liftover of SNP genotype calls GrCH387 to GRCH38 - why not just use rsids as recommended by UCSC?

  Hi,The UCSC specifically advises against using LiftOver for SNP genotype data and instead urges researchers to use rsids where available: https://genome.ucsc.edu/FAQ/FAQreleases.html#snpConversionY...

  • Edited 30 September 2024 08:49
  • 5 followers
  • 4 comments
  • 2 votes