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Bhawana Singh

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Recent activity by Bhawana Singh

  • how to install Bioconductor package limma in RStudio Posit Workbench

    I am running below command in RStudio Posit Workbenchif (!require("BiocManager", quietly = TRUE))   install.packages("BiocManager")BiocManager::install("limma")But it is not installing and giving n...

    • 2 followers
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  • Extracting participant level SNP dosage using BCPtool query

    I am looking to extract participant level SNP doasage for 1 variant using below bcptools command. However, it is returning file with 0kb. Can you please guide me why I am not getting any output? I ...

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  • Swiss knife runs without error but not saving output file

    I need to create .csv for variant rs28362286. I am using Swiss army knife app to extract using bcftools. So I pass input file ‘ukb24310_c1_b2753_v1.vcf.gz’ and command “bcftools query -f '%CHROM\t%...

    • 2 followers
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