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Hannah Louise Nicholls

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Recent activity by Hannah Louise Nicholls

  • How to avoid job failures/restarts?

    Hi all, I have been noticing recently that some jobs I submit via swiss army knife will only succeed after multiple tries. On the tries that fail I get this:Cause of Failure The machine running the...

    • 5 followers
    • 4 comments
    • 1 vote

  • Does dxdata still work?

    I have pip installed dxdata and I've tried using its functions shown in a few github notebooks. Like this one:https://github.com/dnanexus/OpenBio/blob/master/dxdata/getting_started_with_dxdata.ipyn...

    • Edited
    • 4 followers
    • 6 comments
    • 0 votes

  • How to use GCTA on the RAP

    Hi all, I am looking to run conditional analysis via GCTA on the RAP. However, I'm not sure how to best run GCTA.At the moment I've got a setup where on the RAP I run an RStudio workbench and insta...

    • 4 followers
    • 4 comments
    • 1 vote

  • Is it possible to dynamically input files in swiss-army-knife functions?

    Hi all, I have some code using bcftools to make vcf files per gene (with the output vcf files dropping genotypes) at the moment I have some working code but I'd like to see if it's possible to conv...

    • Edited
    • 3 followers
    • 3 comments
    • 0 votes