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Molly D Data Analyst The helpers that keep the community running smoothly. UKB Community team

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Recent activity by Molly D

  • Where do I go for help about the UKB-RAP?

    You should be able to find lots of help here on the UK Biobank Community - it contains articles and posts from UK Biobank and other users, and if you don't find what you need, then you can post you...

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  • How long does it take to be up and running with the data?

    Once you have completed your mandatory training and are using the UKB-RAP, then it usually takes up to 24 hours for data to dispense to your project’s workspace (a private space on the UKB-RAP with...

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  • COVID-19 data

    Facilitating COVID-19 research To facilitate rapid research into the determinants and consequences of COVID-19, in 2020 and 2021 we made the following health record data regularly available:  Diag...

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  • Use of Artificial Intelligence (AI) applications and models

    UK Biobank is well aware of the many recent AI-related developments in clinical research.  UK Biobank considers that the use of AI applications and models is a reasonable (and indeed inevitable) ap...

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  • I do not know if my software runs on the UKB-RAP, what should I do?

    Please check this list of pre-loaded software. If your software is not on the list, or mentioned in the Community’s Forum, then you can ask a question in the Forum, or Submit a Request to the Acces...

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  • Can statistical software be imported into the UKB-RAP?

    Currently, support for statistical tools is via the use of RStudio and Jupyter notebooks with support for Stata, R and Python. We are always keen to hear from users and the feedback will guide the ...

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  • Will my analysis be made publicly available on the UKB-RAP?

    No. Code, analyses and results are not accessible to anyone outside your workspace; that said, if you wish to make your code, example notebooks or tools public then this is possible within the UKB-...

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  • How do I use my local pipeline in the UKB-RAP?

    Most analytical pipelines can be replicated in the UKB-RAP. Here are links to further information about running pipelines provided by DNAnexus: Developing portable pipelines Bringing your App or W...

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  • Can external data be imported into the UKB-RAP?

    Yes. You are responsible for the costs of your storage (see here).   

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  • Is the data structured differently on the UKB-RAP?

    Tabular data is stored in a Spark SQL database, and retains the same data structure as data released in baskets (1 row per participant, with field-instance-array columns). Bulk data is stored in a ...

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    • -3 votes