Dr. Mc. Ninja
Hello
Activity overview
Latest activity by Dr. Mc. Ninja
-
Dr. Mc. Ninja commented,
My assistant said… This is a classic SAIGE “you asked for LOCO but didn’t bake LOCO into the cake” situation 🍰🧬 You ran Step 1 (null model / GRM) without LOCO, but Step 2 is trying to use LOCO. St...
- View comment
- 0 votes
-
Dr. Mc. Ninja commented,
No problem, happy to share the full sheet if it's useful (I guess I may as well): rap_instance_type,aws_instance_type,version,storage_class,storage_rank,gpus,memory_class,vcpus,memory_gib,storage_g...
- View comment
- 1 vote
-
Dr. Mc. Ninja commented,
Thanks so much. Here is a visualisation that's useful for me:
- View comment
- 0 votes
-
Dr. Mc. Ninja created a post,
Job priority trade-off?
Hi,If I use normal priority, I initially get a spot instance, which is cheaper, but can be ‘killed’ without warning (clear enough).I *think* that if a job waits 15 mins for a spot instance, it then...
- Dr. Mc. Ninja
- 2 followers
- 4 comments
- 0 votes
-
Dr. Mc. Ninja commented,
What’s tripping you up is this:Table Exporter doesn’t “export files from your project”. It exports columns from the dispensed UKB Dataset / Cohort / Dashboard into a new CSV/TSV. The only role your...
- View comment
- 1 vote
-
Dr. Mc. Ninja commented,
Short answer: yes, that’s correct 👍On the UK Biobank RAP (DNAnexus), you are only charged once a job actually starts running on an instance. Jobs that exceed the concurrent running limit (for examp...
- View comment
- 0 votes
-
Dr. Mc. Ninja commented,
My assistant says … (NOTE, she has the habit of optimistically making stuff up, so please let me know if this works or not) …You’re not doing anything “wrong” – this is mostly about how Hail + Spar...
- View comment
- 0 votes
-
Dr. Mc. Ninja commented,
Short version (please let me know if it works): Short Answer / FixThis error happens because the compute environment you're using does not have the VEP Docker image installed, so Hail tries to run:...
- View comment
- 0 votes
-
Dr. Mc. Ninja commented,
My assistant came up with the below. Sorry cus the formatting is a bit off, and I haven't tested it. What’s actually going wrong?This bit tells the whole story:Unable to find image dnanexus/dxjupyt...
- View comment
- 0 votes
-
Dr. Mc. Ninja created a post,
Testing WDLs?
Is there a canonical way to test WDLs quickly? e.g. something like unit tests?Thanks.
- Dr. Mc. Ninja
- 1 follower
- 0 comments
- 0 votes