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Ilakya Selvarajan

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Activity overview

Latest activity by Ilakya Selvarajan

  • Ilakya Selvarajan created a post,

    PRSice 2 error

    Hi!Has anyone encountered this error while running the built-in PRSice 2 tool? The reading of the --base summary statistics seems to get truncated, and I can’t pinpoint why.Some context: The summar...

    • Ilakya Selvarajan
    • 1 follower
    • 0 comments
    • 0 votes
  • Ilakya Selvarajan commented,

    Hi! This problem still persists. Any solutions for resolving TOPMed imputed data QC?

  • Ilakya Selvarajan commented,

    Hi Eric,Thanks for your reply! I managed to run the scatter loop successfully. The error occured because I had selected both the .bgen and .bgen.bgi files as input.

  • Ilakya Selvarajan created a post,

    Liftover

    Hi,Can Array Data LiftOver files (https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/end-to-end-target-discovery-with-gwas-and-phewas#array-data-liftover) be transferred to another project o...

    • Ilakya Selvarajan
    • 2 followers
    • 1 comment
    • 0 votes
  • Ilakya Selvarajan created a post,

    End-to-end GWAS Imputed Data QC

    Hi!I'm running the end to end GWAS tutroial and face some errors in the imputed data QC step: https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/end-to-end-target-discovery-with-gwas-and-phe...

    • Ilakya Selvarajan
    • 2 followers
    • 2 comments
    • 0 votes
  • Ilakya Selvarajan created a post,

    Addin interaction term to regenie

    Hi!In the REGENIE tool (https://ukbiobank.dnanexus.com/panx/tool/app/regenie), how can I add an interaction term (https://rgcgithub.github.io/regenie/options/#interaction-testing)? 

    • Ilakya Selvarajan
    • Edited
    • 1 follower
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  • Ilakya Selvarajan commented,

    Hi! I don’t think my project is old, since I created and dispensed it just 2 months ago. I don’t see the “Exome OQFE CRAM files” folder, there’s something else instead. How often should I update th...

  • Ilakya Selvarajan commented,

    Hi! I have been following the GWAS tutorial (https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/end-to-end-target-discovery-with-gwas-and-phewas) and wanted to kindly check whether the array...