Alexandra Baousi
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Recent activity by Alexandra Baousi
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using hail to import GEL .bgen files
Hi all,I am trying to compute info scores using HAIL in the UKB RAP and GEL imputed .bgen files which are zstd compressed. I am doing this in the HAIL-VEP feature of ukb. I am trying to follow this...
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Getting INFO scores for .bgen files
I understand that I can use Swiss Army Knife to get INFO scores for imputed GEL data but the run times are way too long - i have been using this command qctool -g name.bgen -s name.sample -snp-stat...
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